simplify_correction

• Parameters required by “simplify_correction”

result_dir, input_file, num_workers, chunks_num, reads_chunks_num, iso_change_detail, top_n, min_read_len

high_freq_thre, max_error_freq, save_graph, graph_visualization, drawing_graph_num

See parameter descriptions at Parameters

• Run with ini configuration.

noise2read -m simplify_correction -c config.ini

Or

• Run the commands only

  • Evaluating without ground truth data

  noise2read -m simplify_correction -i path/to/raw.fastq -d ./results/
  

  • Evaluating with ground truth data

  noise2read -m simplify_correction -i path/to/raw.fastq -t path/to/true.fastq -d ./results/