Correction#

Take datasets D1-D8 as examples

  1. noise2read installation

Please refer to QuickStart or Installation.

  1. Download datasets

Download UMI-based ground truth datasets from D1_D8

  1. Configuration

    • Download config files from D1_D8 of configs

  2. Run correction on D1

noise2read -m correction -c ./configs/correction/D1_D8/D1.ini

  1. Run amplicon correction on D1

    noise2read -m amplicon_correction -c ./configs/D1_D8/amplicon_correction/D1.ini

  2. Run simplify_correction on D1

    noise2read -m simplify_correction -c ./configs/D1_D8/simplify_correction/D1.ini