Correction

• Parameters required by “correction”

All the parameters of “Paths”, “SourceInputData”, “General”, “GraphSetup”, “EmbeddingSetup”, “AmbiguousSetup” and “ModelTuningSetup”

See parameter descriptions at Parameters

• Run with ini configuration

noise2read -m correction -c config.ini

Or

• Run the commands only

  • Evaluating without ground truth data

  noise2read -m correction -i path/to/raw.fastq -d ./results/
  

  • Evaluating with ground truth data

  noise2read -m correction -i path/to/raw.fastq -t path/to/true.fastq -d ./results/
  

  • Training with GPU (default CPU)

  noise2read -m correction -i path/to/raw.fastq -d ./results/ -g gpu_hist