AbundanceLevel#

The instructions for the case studies of the abundance changes for the reference genome of SARS_Cov_2 and Monkeypox.

  • Clone the codes

git clone https://github.com/Jappy0/noise2read
cd noise2read/CaseStudies/AbundanceLevel

  • For the abundance analysis of SARS_Cov_2

  • Download the reference and original and corrected datasets from folder of SARS_Cov_2 in D18_D21

and move the datasets to the folder */noise2read/CaseStudies/

./SARS_Cov_2_run.sh

  • For the abundance analysis of Monkeypox

  • Download the reference and original and corrected datasets from folder of Monkeypox in D18_D21

and move the datasets to the folder */noise2read/CaseStudies/

./Monkeypox_run.sh