ABEs_CBEs

Correcting outcome sequence of ABEs and CBEs by noise2read

• Clone the codes

git clone https://github.com/Jappy0/noise2read
cd noise2read/CaseStudies
mkdir ABEs_CBEs
cd ABEs_CBEs

• Download datasets under data of D32_D33.

• Using noise2read to correct the datasets. The running time of each experiment is about 13 minutes using 26 cores and GPU for training.

noise2read -m correction -i ./data/ABE_outcome_seqs.fasta -a False -d ./ABE/
noise2read -m correction -i ./data/CBE_outcome_seqs.fasta -a False -d ./CBE/