isomiRs_SNPs#

  • Clone the codes optional if you have already cloned

git clone https://github.com/Jappy0/noise2read
cd noise2read/CaseStudies/IsomiRs_SNPs

  • Download datasets under data of D22_D31 and move it to the directory of *CaseStudies/IsomiRs_SNPs

  • Run correction

python correction.py ./data/no_adapters ./result/ ./corrected

  • Then run

cd isoMiRmap
python run.py
python analysis.py ../isomimap_result/raw ../isomimap_result/corrected ../isomimap_result

  • If you want to remove adapters yourself using cutadapt,

    • Make sure you have installed cutadapt

    • Then run

    cd CaseStudies/IsomiRs_SNPs
python cutadapters.py